EGSEA: Ensemble of Gene Set Enrichment Analyses

This package implements the Ensemble of Gene Set Enrichment Analyses (EGSEA) method for gene set testing.

AuthorMonther Alhamdoosh, Milica Ng and Matthew Ritchie
Date of publicationNone
MaintainerMonther Alhamdoosh <m.hamdoosh@gmail.com>
LicenseGPL-2
Version1.2.0

View on Bioconductor

Functions

buildCustomIdx Man page
buildGeneSetDBIdx Man page
buildIdx Man page
buildKEGGIdx Man page
buildMSigDBIdx Man page
egsea Man page
EGSEA Man page
egsea.base Man page
egsea.cnt Man page
egsea.combine Man page
egsea.ora Man page
EGSEA-package Man page
EGSEAResults Man page
EGSEAResults-class Man page
$,EGSEAResults-method Man page
egsea.sort Man page
getlimmaResults Man page
getlimmaResults,EGSEAResults-method Man page
getSetByID Man page
getSetByID,GSCollectionIndex-method Man page
getSetByName Man page
getSetByName,GSCollectionIndex-method Man page
getSetScores Man page
getSetScores,EGSEAResults-method Man page
GSCollectionIndex Man page
GSCollectionIndex-class Man page
$,GSCollectionIndex-method Man page
limmaTopTable Man page
limmaTopTable,EGSEAResults-method Man page
plotGOGraph Man page
plotGOGraph,EGSEAResults-method Man page
plotHeatmap Man page
plotHeatmap,EGSEAResults-method Man page
plotMethods Man page
plotMethods,EGSEAResults-method Man page
plotPathway Man page
plotPathway,EGSEAResults-method Man page
plotSummary Man page
plotSummary,EGSEAResults-method Man page
plotSummaryHeatmap Man page
plotSummaryHeatmap,EGSEAResults-method Man page
show,EGSEAResults-method Man page
show,GSCollectionIndex-method Man page
showSetByID Man page
showSetByID,EGSEAResults-method Man page
showSetByName Man page
showSetByName,EGSEAResults-method Man page
summary,EGSEAResults-method Man page
summary,GSCollectionIndex-method Man page
topSets Man page
topSets,EGSEAResults-method Man page

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