EGSEA-package: Ensemble of Gene Enrichment Analysis (EGSEA)

Description Usage Arguments Details Value Author(s) References

Description

This packages provides the implementation of the EGSEA algorithm and addition functions to help perform GSE analysis.

This function writes out the official EGSEA package logo

Usage

1
egsea.logo(out.dir = "./")

Arguments

out.dir

character, the target directory to which the logo will be written.

Details

This function generates a PNG file of the EGSEA logo, which can be used to acknowledge EGSEA in presentations/reports. The logo was designed by Roberto Bonelli from The Walter and Eliza Hall Institute of Medical Research.

Value

a PNG file.

Author(s)

Monther Alhamdoosh, Milica Ng and Matthew Ritchie

References

Monther Alhamdoosh, Milica Ng, Nicholas J. Wilson, Julie M. Sheridan, Huy Huynh, Michael J. Wilson, Matthew E. Ritchie; Combining multiple tools outperforms individual methods in gene set enrichment analyses. Bioinformatics 2017; 33 (3): 414-424. doi: 10.1093/bioinformatics/btw623



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