This package is part of the Bioconductor project and implements the Ensemble of Gene Set Enrichment Analyses (EGSEA) method for gene set testing.
Author: Monther Alhamdoosh, Luyi Tian, Milica Ng and Matthew Ritchie
Maintainer: Monther Alhamdoosh
Citation (from within R, enter
Alhamdoosh M, Ng M, Wilson N, Sheridan J, Huynh H, Wilson M and Ritchie M (2017). “Combining multiple tools outperforms individual methods in gene set enrichment analyses.” Bioinformatics, 33(3). doi: 10.1093/bioinformatics/btw623.
Alhamdoosh M, Law CW, Tian L et al. Easy and efficient ensemble gene set testing with EGSEA [version 1; peer review: 1 approved, 3 approved with reservations]. F1000Research 2017, 6:2010. doi: 10.12688/f1000research.12544.1
To install the stable release of this package, start R and enter:
## try http:// if https:// URLs are not supported if (!requireNamespace("BiocManager", quietly=TRUE)) install.packages("BiocManager") BiocManager::install("EGSEA")
To install the development version of this package, start R and enter:
install.packages("devtools") # if you have not installed "devtools" package devtools::install_github("malhamdoosh/EGSEA")
To view documentation for the version of this package installed in your system, start R and enter:
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