cannin/paxtoolsr: Access Pathways from Multiple Databases Through BioPAX and Pathway Commons

The package provides a set of R functions for interacting with BioPAX OWL files using Paxtools and the querying Pathway Commons (PC) molecular interaction database. Pathway Commons is a project by the Memorial Sloan-Kettering Cancer Center (MSKCC), Dana-Farber Cancer Institute (DFCI), and the University of Toronto. Pathway Commons databases include: BIND, BioGRID, CORUM, CTD, DIP, DrugBank, HPRD, HumanCyc, IntAct, KEGG, MirTarBase, Panther, PhosphoSitePlus, Reactome, RECON, TRANSFAC.

Getting started

Package details

Bioconductor views GeneSetEnrichment GraphAndNetwork KEGG Network NetworkEnrichment Pathways Reactome Software SystemsBiology
Maintainer
LicenseLGPL-3
Version1.27.3
URL https://github.com/BioPAX/paxtoolsr
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
install.packages("remotes")
remotes::install_github("cannin/paxtoolsr")
cannin/paxtoolsr documentation built on Oct. 30, 2021, 12:13 p.m.