toLevel3: Convert a PSIMI or older BioPAX OWL file to BioPAX Level 3

Description Usage Arguments Value Examples

View source: R/toLevel3.R

Description

This file will convert PSIMI or older BioPAX objects to BioPAX Level 3

Usage

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toLevel3(inputFile, outputFile = NULL)

Arguments

inputFile

a string of the name of the input file

outputFile

a string of the name of the output BioPAX OWL file

Value

an XMLInternalDocument representing a BioPAX OWL file

Examples

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inputFile <- system.file("extdata", "raf_map_kinase_cascade_reactome.owl", 
  package="paxtoolsr")
outFile <- tempfile()
results <- toLevel3(inputFile, outFile) 

cannin/paxtoolsr documentation built on Aug. 16, 2018, 1:18 a.m.