convertSifToGmt: Convert SIF to GMT

Description Usage Arguments Value Examples

View source: R/convertSifToGmt.R

Description

Convert SIF to GMT

Usage

1
convertSifToGmt(sif, name = "gmt", returnSmallMolecules = FALSE)

Arguments

sif

a data.frame representing a SIF (Simple Interaction Format)

name

the name of the gene set

returnSmallMolecules

a boolean whether to return genes or small molecules in the gene set

Value

a list with one entry being a vector

Examples

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sif <- readSif(system.file("extdata", "test_sif.txt", package="paxtoolsr"))
gmt <- convertSifToGmt(sif)

cannin/paxtoolsr documentation built on Oct. 5, 2018, 11:23 p.m.