convertSifToGmt: Convert SIF to GMT

View source: R/convertSifToGmt.R

convertSifToGmtR Documentation

Convert SIF to GMT

Description

Convert SIF to GMT

Usage

convertSifToGmt(sif, name = "gmt", returnSmallMolecules = FALSE)

Arguments

sif

a data.frame representing a SIF (Simple Interaction Format)

name

the name of the gene set

returnSmallMolecules

a boolean whether to return genes or small molecules in the gene set

Value

a list with one entry being a vector

Examples

sif <- readSif(system.file("extdata", "test_sif.txt", package="paxtoolsr"))
gmt <- convertSifToGmt(sif)


cannin/paxtoolsr documentation built on Feb. 2, 2023, 11:44 a.m.