topPathways: Retrieve top pathways

Description Usage Arguments Details Value Examples

View source: R/topPathways.R

Description

This command returns all "top" pathways.

Usage

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topPathways(q = NULL, datasource = NULL, organism = NULL,
  verbose = FALSE)

Arguments

q

[Optional] a keyword, name, external identifier, or a Lucene query string, like in 'search', but the default is '*' (match all).

datasource

filter by data source (same as for 'search').

organism

organism filter (same as for 'search').

verbose

a boolean, display the command used to query Pathway Commons

Details

Pathways that are neither 'controlled' nor 'pathwayComponent' of another process.

Value

a data.frame with the following columns:

Examples

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#results <- topPathways(datasource="panther")

cannin/paxtoolsr documentation built on Jan. 13, 2018, 4:53 p.m.