readPcPathwaysInfo: Read in Pathway Commons Pathways Information

View source: R/readPcPathwaysInfo.R

readPcPathwaysInfoR Documentation

Read in Pathway Commons Pathways Information

Description

Read in Pathway Commons Pathways Information

Usage

readPcPathwaysInfo(inputFile = NULL, version = NULL)

Arguments

inputFile

an inputFile; if NULL then retrieve the current pathways.txt; see details (default: NULL)

version

a version number for a previous version of Pathway Commons data; versions 3 and above. Parameter set as version="8". Available versions "http://www.pathwaycommons.org/archives/PC2/"

Details

This file is generally found as pathways.txt.gz (e.g. http://www.pathwaycommons.org/archives/PC2/current/pathways.txt.gz)

Value

a data.frame

Examples

inputFile <- system.file("extdata", "pathways.txt.gz", package="paxtoolsr")
results <- readPcPathwaysInfo(inputFile, version="8")


cannin/paxtoolsr documentation built on Feb. 2, 2023, 11:44 a.m.