readPcPathwaysInfo: Read in Pathway Commons Pathways Information
In cannin/paxtoolsr: Access Pathways from Multiple Databases Through BioPAX and Pathway Commons
View source: R/readPcPathwaysInfo.R
readPcPathwaysInfo R Documentation
Read in Pathway Commons Pathways Information
Description
Read in Pathway Commons Pathways Information
Usage
readPcPathwaysInfo(inputFile = NULL, version = NULL)
Arguments
inputFile
an inputFile; if NULL then retrieve the current pathways.txt; see details (default: NULL)
version
a version number for a previous version of Pathway Commons data;
versions 3 and above. Parameter set as version="8". Available versions "http://www.pathwaycommons.org/archives/PC2/"
Details
This file is generally found as pathways.txt.gz (e.g.
http://www.pathwaycommons.org/archives/PC2/current/pathways.txt.gz)
Value
a data.frame
Examples
inputFile <- system.file("extdata", "pathways.txt.gz", package="paxtoolsr")
results <- readPcPathwaysInfo(inputFile, version="8")
cannin/paxtoolsr documentation built on Feb. 2, 2023, 11:44 a.m.
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View source: R/readPcPathwaysInfo.R
| readPcPathwaysInfo | R Documentation |
Read in Pathway Commons Pathways Information
Description
Read in Pathway Commons Pathways Information
Usage
readPcPathwaysInfo(inputFile = NULL, version = NULL)
Arguments
inputFile |
an inputFile; if NULL then retrieve the current pathways.txt; see details (default: NULL) |
version |
a version number for a previous version of Pathway Commons data; versions 3 and above. Parameter set as version="8". Available versions "http://www.pathwaycommons.org/archives/PC2/" |
Details
This file is generally found as pathways.txt.gz (e.g. http://www.pathwaycommons.org/archives/PC2/current/pathways.txt.gz)
Value
a data.frame
Examples
inputFile <- system.file("extdata", "pathways.txt.gz", package="paxtoolsr")
results <- readPcPathwaysInfo(inputFile, version="8")
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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