mergeBiopax: Merges two BioPAX OWL files

Description Usage Arguments Details Value Examples

View source: R/mergeBiopax.R

Description

This function merges two BioPAX OWL files

Usage

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mergeBiopax(inputFile1, inputFile2, outputFile = NULL)

Arguments

inputFile1

a string of the name of the input BioPAX OWL file

inputFile2

a string of the name of the input BioPAX OWL file

outputFile

a string of the name of the output merged BioPAX OWL file (Optional)

Details

Only entities that share IDs will be merged. No additional merging occurs on cross-references. Merging may result in warning messages caused as a result of redundant actions being checked against by the Java library; these messages may be ignored.

Value

an XMLInternalDocument representing a BioPAX OWL file

Examples

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outFile <- tempfile()
results <- mergeBiopax(system.file("extdata", "raf_map_kinase_cascade_reactome.owl", 
                       package="paxtoolsr"), 
                       system.file("extdata", "dna_replication.owl", 
                       package="paxtoolsr"), 
                       outFile) 

cannin/paxtoolsr documentation built on Aug. 16, 2018, 1:18 a.m.