Files in cannin/paxtoolsr
PaxtoolsR: Access Pathways from Multiple Databases through BioPAX and Pathway Commons

.Rbuildignore
.Rinstignore
.gitignore
.travis.yml
DESCRIPTION
NAMESPACE
NEWS
R/addAttributeList.R R/checkInputFile.R R/checkOutputFile.R R/convertDataFrameListsToVectors.R R/convertIds.R R/convertSifToGmt.R R/convertSifToSpia.R R/convertSifnxIds.R R/convertToDF.R R/convertToDT.R R/convertToDataFrameWithListOfVectors.R R/convertToPathwayList.R R/downloadFile.R R/downloadPc.R R/downloadPc2.R R/downloadSignedPC.R R/extractIds.R R/fetch.R R/filterSif.R R/fromPsimi.R R/getCacheFiles.R R/getErrorMessage.R R/getNeighbors.R R/getPc.R R/getPcDatabaseNames.R R/getPcRequest.R R/getPcUrl.R R/getShortestPathSif.R R/getSifInteractionCategories.R R/graphPc.R R/integrateBiopax.R R/loadSifInIgraph.R R/mapValues.R R/mergeBiopax.R R/paxtoolsr.R R/pcDirections.R R/pcFormats.R R/pcGraphQueries.R R/processPcRequest.R R/readBiopax.R R/readGmt.R R/readPcPathwaysInfo.R R/readSbgn.R R/readSif.R R/readSifnx.R R/readSifnxSmall.R R/searchListOfVectors.R R/searchPc.R R/splitSifnxByPathway.R R/summarize.R R/summarizeSif.R R/toCytoscape.R R/toGSEA.R R/toLevel3.R R/toSBGN.R R/toSif.R R/toSifnx.R R/topPathways.R R/traverse.R R/validate.R README.md
inst/CITATION
inst/extdata/10523676-compact.xml
inst/extdata/REACT_12034-3.owl
inst/extdata/biopax3-short-metabolic-pathway.owl
inst/extdata/dna_replication.owl
inst/extdata/pathways.txt.gz
inst/extdata/raf_map_kinase_cascade_reactome.owl
inst/extdata/tca_cycle.sif
inst/extdata/test_biopax.owl
inst/extdata/test_edgelist.txt
inst/extdata/test_gsea.gmt
inst/extdata/test_gsea_1.gmt
inst/extdata/test_sbgn.xml
inst/extdata/test_sif.txt
inst/extdata/test_sif_shortestPath.txt
inst/extdata/test_sifnx.txt
inst/extdata/test_sifnx2.txt
inst/extdata/test_sifnx_250.txt
inst/extdata/test_sifnx_sm.txt
inst/java/paxtools-4.3.1.jar
inst/paxtoolsNotes.txt
java/README.md man/addAttributeList.Rd man/convertDataFrameListsToVectors.Rd man/convertIds.Rd man/convertSifToGmt.Rd man/convertSifToSpia.Rd man/convertSifnxIds.Rd man/convertToDF.Rd man/convertToDT.Rd man/convertToDataFrameWithListOfVectors.Rd man/downloadFile.Rd man/downloadPc2.Rd man/downloadSignedPC.Rd man/extractIds.Rd man/fetch.Rd man/filterSif.Rd man/getCacheFiles.Rd man/getErrorMessage.Rd man/getNeighbors.Rd man/getPc.Rd man/getPcDatabaseNames.Rd man/getPcUrl.Rd man/getShortestPathSif.Rd man/getSifInteractionCategories.Rd man/graphPc.Rd man/integrateBiopax.Rd man/loadSifInIgraph.Rd man/mapAttributes.Rd man/mapValues.Rd man/mergeBiopax.Rd man/pcDirections.Rd man/pcFormats.Rd man/pcGraphQueries.Rd man/processPcRequest.Rd man/readBiopax.Rd man/readGmt.Rd man/readPcPathwaysInfo.Rd man/readSbgn.Rd man/readSif.Rd man/readSifnx.Rd man/readSifnxSmall.Rd man/searchListOfVectors.Rd man/searchPc.Rd man/skip_on_bioc.Rd man/splitSifnxByPathway.Rd man/summarize.Rd man/summarizeSif.Rd man/toCytoscape.Rd man/toGSEA.Rd man/toLevel3.Rd man/toSBGN.Rd man/toSif.Rd man/toSifnx.Rd man/topPathways.Rd man/traverse.Rd man/validate.Rd
paxtoolsr.Rproj
tests/runTests.old
tests/testthat.R tests/testthat/test_pathwayCommons.R tests/testthat/test_paxtools.R vignettes/extract_pathways.R vignettes/getNeighbors.R vignettes/using_paxtoolsr.Rmd
cannin/paxtoolsr documentation built on Aug. 16, 2018, 1:18 a.m.