rosscm/fedup: Fisher's Test for Enrichment and Depletion of User-Defined Pathways
An R package that tests for enrichment and depletion of user-defined pathways using a Fisher's exact test. The method is designed for versatile pathway annotation formats (eg. gmt, txt, xlsx) to allow the user to run pathway analysis on custom annotations. This package is also integrated with Cytoscape to provide network-based pathway visualization that enhances the interpretability of the results.
Getting started
Browse package contents
Package details |
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| Bioconductor views | GeneSetEnrichment Network NetworkEnrichment Pathways |
| Maintainer | |
| License | MIT + file LICENSE |
| Version | 1.0.0 |
| URL | https://github.com/rosscm/fedup |
| Package repository | View on GitHub |
| Installation |
Install the latest version of this package by entering the following in R:
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