writePathways: Writes a set of pathways (list of vectors) to a GMT file.
In rosscm/fedup: Fisher's Test for Enrichment and Depletion of User-Defined Pathways
Description
Usage
Arguments
Value
Examples
Description
Writes a set of pathways (list of vectors) to a GMT file.
Usage
1
writePathways(pathways, gmtFile)
Arguments
pathways
(list) named list of vectors
gmtFile
(char) name of output GMT file
Value
GMT-formatted file. Rows represent pathways. Columns represent:
pathway ID;
description;
a list of tab-delimited genes
Examples
1
2
data(pathwaysXLSX)
writePathways(pathwaysXLSX, tempfile("pathwaysXLSX", fileext = ".gmt"))
rosscm/fedup documentation built on July 19, 2021, 2:21 a.m.
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Description Usage Arguments Value Examples
Description
Writes a set of pathways (list of vectors) to a GMT file.
Usage
1 | writePathways(pathways, gmtFile)
|
Arguments
pathways |
(list) named list of vectors |
gmtFile |
(char) name of output GMT file |
Value
GMT-formatted file. Rows represent pathways. Columns represent:
pathway ID;
description;
a list of tab-delimited genes
Examples
1 2 | data(pathwaysXLSX)
writePathways(pathwaysXLSX, tempfile("pathwaysXLSX", fileext = ".gmt"))
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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