The CEMiTool package unifies the discovery and the analysis of coexpression gene modules in a fully automatic manner, while providing a user-friendly html report with high quality graphs. Our tool evaluates if modules contain genes that are over-represented by specific pathways or that are altered in a specific sample group. Additionally, CEMiTool is able to integrate transcriptomic data with interactome information, identifying the potential hubs on each network.
|Author||Pedro Russo [aut], Gustavo Ferreira [aut], Matheus Bürger [aut], Lucas Cardozo [aut], Diogenes Lima [aut], Thiago Hirata [aut], Melissa Lever [aut], Helder Nakaya [aut, cre]|
|Bioconductor views||GeneExpression GraphAndNetwork ImmunoOncology Network NetworkEnrichment Pathways RNASeq Transcriptomics mRNAMicroarray|
|Maintainer||Helder Nakaya <[email protected]>|
|Package repository||View on Bioconductor|
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