CEMiTool: Co-expression Modules identification Tool
Version 1.4.2

The CEMiTool package unifies the discovery and the analysis of coexpression gene modules in a fully automatic manner, while providing a user-friendly html report with high quality graphs. Our tool evaluates if modules contain genes that are over-represented by specific pathways or that are altered in a specific sample group. Additionally, CEMiTool is able to integrate transcriptomic data with interactome information, identifying the potential hubs on each network.

Package details

AuthorPedro Russo [aut], Gustavo Ferreira [aut], Matheus Bürger [aut], Lucas Cardozo [aut], Diogenes Lima [aut], Thiago Hirata [aut], Melissa Lever [aut], Helder Nakaya [aut, cre]
Bioconductor views GeneExpression GraphAndNetwork Network NetworkEnrichment Pathways RNASeq Transcriptomics mRNAMicroarray
Date of publication2018-06-25
MaintainerHelder Nakaya <[email protected]>
LicenseGPL-3
Version1.4.2
Package repositoryView on Bioconductor
Installation Install the latest version of this package by entering the following in R:
source("https://bioconductor.org/biocLite.R")
biocLite("CEMiTool")

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CEMiTool documentation built on June 26, 2018, 6 p.m.