cem: CEMiTool Object

In CEMiTool: Co-expression Modules identification Tool

Description

This object can be used as input for CEMiTool functions. Data used are from expr and sample_annot.

Usage

data(cem)

Format

An object of class CEMiTool

Examples

# Get example CEMiTool object
data(cem)
cem

Example output

Warning message:
replacing previous import ‘ggplot2::annotate’ by ‘ggpmisc::annotate’ when loading ‘CEMiTool’ 
CEMiTool Object
- Number of modules: 5 
- Modules:  (data.frame: 257x2): 
  genes        modules
1  HBA1 Not.Correlated
2 RPS26             M4
3   LYZ Not.Correlated
- Expression file: data.frame with 4000 genes and 45 samples
- Gene Set Enrichment Analysis: null
- Over Representation Analysis: null
- Profile plot: null
- Enrichment plot: null
- ORA barplot: null
- Beta x R2 plot: null
- Mean connectivity plot: null

CEMiTool documentation built on March 13, 2021, 2 a.m.