plot_ora_single: ORA visualization for one module
In CEMiTool: Co-expression Modules identification Tool
Description
Usage
Arguments
Value
View source: R/visualization.R
Description
ORA visualization for one module
Usage
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plot_ora_single(
es,
ordr_by = "p.adjust",
max_length = 50,
pv_cut = 0.05,
graph_color = "#4169E1",
title = "Over Representation Analysis"
)
Arguments
es
a data.frame from ora function containing only one module
ordr_by
column to order the data.frame
max_length
max length of a gene set name
pv_cut
p-value cuttoff
graph_color
color of bars
title
title of the graph
Value
a list with ggplot2 object and the number of significant gene sets
CEMiTool documentation built on March 13, 2021, 2 a.m.
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Description Usage Arguments Value
View source: R/visualization.R
Description
ORA visualization for one module
Usage
1 2 3 4 5 6 7 8 | plot_ora_single(
es,
ordr_by = "p.adjust",
max_length = 50,
pv_cut = 0.05,
graph_color = "#4169E1",
title = "Over Representation Analysis"
)
|
Arguments
es |
a data.frame from ora function containing only one module |
ordr_by |
column to order the data.frame |
max_length |
max length of a gene set name |
pv_cut |
p-value cuttoff |
graph_color |
color of bars |
title |
title of the graph |
Value
a list with ggplot2 object and the number of significant gene sets
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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