get_connectivity: Calculate network connectivity

Description Usage Arguments Value Examples

Description

This function takes a CEMiTool object and returns the network connectivity.

Usage

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get_connectivity(cem, ...)

## S4 method for signature 'CEMiTool'
get_connectivity(cem, beta)

Arguments

cem

Object of class CEMiTool containing the fit_indices slot

...

Optional parameters.

beta

A soft-thresholding value to be used for the network.

Value

The value of the network's connectivity.

Examples

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# Get example expression data
data(expr0)
# Initialize new CEMiTool object with expression data
cem <- new_cem(expr0, filter=TRUE, apply_vst=FALSE)
# Get modules and beta data
cem <- find_modules(cem)
# Get network connectivity with example beta value 8
get_connectivity(cem, beta=8)

CEMiTool documentation built on March 13, 2021, 2 a.m.