lgeistlinger/ToPASeq: Topology-based pathway analysis of RNA-seq data

Implementation of methods for topology-based pathway analysis of RNA-seq data. This includes Topological Analysis of Pathway Phenotype Association (TAPPA; Gao and Wang, 2007), PathWay Enrichment Analysis (PWEA; Hung et al., 2010), and the Pathway Regulation Score (PRS; Ibrahim et al., 2012).

Getting started

Package details

AuthorIvana Ihnatova, Eva Budinska, Ludwig Geistlinger
Bioconductor views DifferentialExpression GeneExpression GraphAndNetwork NetworkEnrichment Pathways RNASeq Visualization
MaintainerLudwig Geistlinger <ludwig.geistlinger@sph.cuny.edu>
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
lgeistlinger/ToPASeq documentation built on May 25, 2019, 9:32 p.m.