lgeistlinger/ToPASeq: Topology-based pathway analysis of RNA-seq data
Implementation of methods for topology-based pathway analysis of RNA-seq data. This includes Topological Analysis of Pathway Phenotype Association (TAPPA; Gao and Wang, 2007), PathWay Enrichment Analysis (PWEA; Hung et al., 2010), and the Pathway Regulation Score (PRS; Ibrahim et al., 2012).
Getting started
Browse package contents
Package details |
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| Author | Ivana Ihnatova, Eva Budinska, Ludwig Geistlinger |
| Bioconductor views | DifferentialExpression GeneExpression GraphAndNetwork NetworkEnrichment Pathways RNASeq Visualization |
| Maintainer | Ludwig Geistlinger <ludwig.geistlinger@sph.cuny.edu> |
| License | AGPL-3 |
| Version | 1.17.0 |
| Package repository | View on GitHub |
| Installation |
Install the latest version of this package by entering the following in R:
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