ToPASeq: Topology-based pathway analysis of RNA-seq data

Implementation of methods for topology-based pathway analysis of RNA-seq data. This includes Topological Analysis of Pathway Phenotype Association (TAPPA; Gao and Wang, 2007), PathWay Enrichment Analysis (PWEA; Hung et al., 2010), and the Pathway Regulation Score (PRS; Ibrahim et al., 2012).

Package details

AuthorIvana Ihnatova, Eva Budinska, Ludwig Geistlinger
Bioconductor views DifferentialExpression GeneExpression GraphAndNetwork ImmunoOncology NetworkEnrichment Pathways RNASeq Visualization
MaintainerIvana Ihnatova <>
Package repositoryView on Bioconductor
Installation Install the latest version of this package by entering the following in R:
if (!requireNamespace("BiocManager", quietly = TRUE))


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ToPASeq documentation built on Nov. 8, 2020, 4:59 p.m.