ToPASeq: Topology-based pathway analysis of RNA-seq data

Implementation of methods for topology-based pathway analysis of RNA-seq data. This includes Topological Analysis of Pathway Phenotype Association (TAPPA; Gao and Wang, 2007), PathWay Enrichment Analysis (PWEA; Hung et al., 2010), and the Pathway Regulation Score (PRS; Ibrahim et al., 2012).

Package details

AuthorIvana Ihnatova, Eva Budinska, Ludwig Geistlinger
Bioconductor views DifferentialExpression GeneExpression GraphAndNetwork ImmunoOncology NetworkEnrichment Pathways RNASeq Visualization
MaintainerIvana Ihnatova <[email protected]>
LicenseAGPL-3
Version1.20.0
Package repositoryView on Bioconductor
Installation Install the latest version of this package by entering the following in R:
source("https://bioconductor.org/biocLite.R")
biocLite("ToPASeq")

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ToPASeq documentation built on Oct. 31, 2019, 9:35 a.m.