bhatturam/prius: Affected pathway ranking in differential gene expression analysis
An R package to analyse affected pathways in differential expression experiments. The approach is to disturb each node of a gene-gene interaction network proportional to the observed expression from the experiment and rank the pathways based on how much they are affected. The package currently supports microarray data from Gene Expression Omnibus, PPI data from iRef and Reactome and pathways from Reactome.
Getting started
Browse package contents
Package details |
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| Author | Shailesh Patil, Bharath Venkatesh, Randeep Singh |
| Bioconductor views | DifferentialExpression GeneExpression Genetics GraphAndNetwork Microarray NetworkEnrichment |
| Maintainer | Bharath Venkatesh <bharath.venkatesh85@gmail.com> |
| License | MIT + file LICENSE |
| Version | 0.99.0 |
| URL | https://github.com/bhatturam/prius |
| Package repository | View on GitHub |
| Installation |
Install the latest version of this package by entering the following in R:
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