README.md

In bhatturam/prius: Affected pathway ranking in differential gene expression analysis

Prius

This is an R package for analysis of affected pathways in differential gene expression experiments For more details refer the preprint From Differentiated Genes to Affected Pathways which can be found at http://biorxiv.org/content/early/2016/02/07/038901.

This package can be installed in R using devtools using the function install_github by running the following commands

  library(devtools)
  install_github("bhatturam/prius")

For an example of individual and cohort analysis (Datasets used in the paper), please look at demo.R. Refer the manual for documentation of the R functions in the package.

NOTE:

The package TCGAbiolinks, that is used in demo.R to fetch data from TCGA has stopped working. This is because the TCGA data has been moved. (See post here - https://support.bioconductor.org/p/83999/).

bhatturam/prius documentation built on May 12, 2019, 8:24 p.m.