outdegreeNormalizedFCOneMinusPScoreFunction: Outdegree normalized fold change and p-value based scoring
In bhatturam/prius: Affected pathway ranking in differential gene expression analysis
Description
Usage
Arguments
Value
Description
Uses the fold change, p-values and the outdegree of the nodes to define a
score function for use with computePersonalizationVectors
Usage
1
2
outdegreeNormalizedFCOneMinusPScoreFunction(experimentalData, PPIGraph,
extraArgs)
Arguments
experimentalData
experimentalData A data frame with as many rows as
HGNC Gene Symbols, with the columns defined by the output of testFunction.
The output of runTestOnData.
PPIGraph
PPIGraph A list containing igraph_object - the igraph object
and vertex_map - a frame containing node attributes currently indegree and
outdegree. The output of createIGraphObject
extraArgs
NA
Value
A data frame with two columns npv - normal personalization vector and
dpv - disease personalization vector. There are as many rows as number of
HGNC Symbols in PPIGraph
bhatturam/prius documentation built on May 12, 2019, 8:24 p.m.
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Description Usage Arguments Value
Description
Uses the fold change, p-values and the outdegree of the nodes to define a
score function for use with computePersonalizationVectors
Usage
1 2 | outdegreeNormalizedFCOneMinusPScoreFunction(experimentalData, PPIGraph,
extraArgs)
|
Arguments
experimentalData |
experimentalData A data frame with as many rows as
HGNC Gene Symbols, with the columns defined by the output of testFunction.
The output of |
PPIGraph |
PPIGraph A list containing igraph_object - the igraph object
and vertex_map - a frame containing node attributes currently indegree and
outdegree. The output of |
extraArgs |
NA |
Value
A data frame with two columns npv - normal personalization vector and dpv - disease personalization vector. There are as many rows as number of HGNC Symbols in PPIGraph
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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