getGeneInteractionsFromIRefMITAB: Get a gene interaction data frame from a iRef ppi mitab data...
In bhatturam/prius: Affected pathway ranking in differential gene expression analysis
Description
Usage
Arguments
Value
Examples
Description
Get a gene interaction data frame from a iRef ppi mitab data frame
Usage
1
Arguments
mitab
@param mitab - The mitab data frame containing PPI's e.g
Obtained using
http://www.inside-r.org/packages/cran/iRefR/docs/get_irefindex
Value
a data frame that contains the gene interaction
graph in two columns, the first being the source HGNCSymbol and the second
being the target HGNCSymbol of an interaction
Examples
1
2
3
4
5
6
## Not run:
library(iRefR)
iref_mitab=get_irefindex(tax_id="9606",data_folder="/tmp/",iref_version = "13.0")
irefGeneInteractions = getGeneInteractionListFromIRefMITAB(iref_mitab)
## End(Not run)
bhatturam/prius documentation built on May 12, 2019, 8:24 p.m.
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Description Usage Arguments Value Examples
Description
Get a gene interaction data frame from a iRef ppi mitab data frame
Usage
1 |
Arguments
mitab |
@param mitab - The mitab data frame containing PPI's e.g Obtained using http://www.inside-r.org/packages/cran/iRefR/docs/get_irefindex |
Value
a data frame that contains the gene interaction graph in two columns, the first being the source HGNCSymbol and the second being the target HGNCSymbol of an interaction
Examples
1 2 3 4 5 6 | ## Not run:
library(iRefR)
iref_mitab=get_irefindex(tax_id="9606",data_folder="/tmp/",iref_version = "13.0")
irefGeneInteractions = getGeneInteractionListFromIRefMITAB(iref_mitab)
## End(Not run)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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