FEM: Identification of Functional Epigenetic Modules

The FEM package performs a systems-level integrative analysis of DNA methylation and gene expression data. It seeks modules of functionally related genes which exhibit differential promoter DNA methylation and differential expression, where an inverse association between promoter DNA methylation and gene expression is assumed. For full details, see Jiao et al Bioinformatics 2014.

AuthorAndrew E. Teschendorff and Zhen Yang
Date of publicationNone
MaintainerZhen Yang <yangzhen@picb.ac.cn>
LicenseGPL (>=2)
Version3.2.0

View on Bioconductor

Files in this package

FEM/DESCRIPTION
FEM/NAMESPACE
FEM/R
FEM/R/DoEpiMod.R FEM/R/DoExpMod.R FEM/R/DoFEMbi.R FEM/R/DoIntEpi450k.R FEM/R/DoIntExp.R FEM/R/DoIntFEM450k.R FEM/R/FemModShow.R FEM/R/GenStatM.R FEM/R/GenStatMsp.R FEM/R/GenStatR.R
FEM/build
FEM/build/vignette.rds
FEM/data
FEM/data/Realdata.rda
FEM/data/Toydata.rda
FEM/data/datalist
FEM/data/probe450kfemanno.rda
FEM/data/probeEPICfemanno.rda
FEM/inst
FEM/inst/CITATION
FEM/inst/doc
FEM/inst/doc/IntroDoFEM.R
FEM/inst/doc/IntroDoFEM.Rnw
FEM/inst/doc/IntroDoFEM.pdf
FEM/inst/unitTests
FEM/inst/unitTests/test_FEM.R
FEM/man
FEM/man/DoEpiMod.Rd FEM/man/DoExpMod.Rd FEM/man/DoFEMbi.Rd FEM/man/DoIntEpi450k.Rd FEM/man/DoIntExp.Rd FEM/man/DoIntFEM450k.Rd FEM/man/FEM-package.Rd FEM/man/FemModShow.Rd FEM/man/GenStatM.Rd FEM/man/GenStatMsp.Rd FEM/man/GenStatR.Rd FEM/man/Realdata.Rd FEM/man/Toydata.Rd FEM/man/probe450kfemanno.Rd FEM/man/probeEPICfemanno.Rd
FEM/tests
FEM/tests/runTests.R
FEM/vignettes
FEM/vignettes/HAND2.pdf
FEM/vignettes/HAND2epi.pdf
FEM/vignettes/IntroDoFEM.Rnw
FEM/vignettes/IntroDoFEM.bib
FEM/vignettes/ZWINTexp.pdf
FEM/vignettes/bmc_article.bst
FEM/vignettes/bmcart-biblio.sty
FEM/vignettes/cite.sty
FEM/vignettes/fancyvrb.sty
FEM/vignettes/inconsolata.sty
FEM/vignettes/lastpage.sty
FEM/vignettes/rotating.sty
FEM/vignettes/url.sty
FEM/vignettes/xcolor.sty

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