lubianat/fcoex: FCBF-based Co-Expression Networks for Single Cells

The fcoex package implements an easy-to use interface to co-expression analysisbased on the FCBF (Fast Correlation-Based Filter) algorithm. it was implemented especifically to deal with single-cell data. The modules found can be used to redefine cell populations, unrevel novel gene associations and predict gene function by guilt-by-association. The package structure is based on the CEMiTool package.

Getting started

Package details

Bioconductor views GeneExpression GraphAndNetwork ImmunoOncology Network NetworkEnrichment Pathways RNASeq SingleCell Transcriptomics mRNAMicroarray
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
lubianat/fcoex documentation built on Aug. 6, 2020, 3:39 a.m.