mod_ora: # Run module overrepresentation analysis
In lubianat/fcoex: FCBF-based Co-Expression Networks for Single Cells

# Run module overrepresentation analysis

mod_ora(fc, gmt, verbose = FALSE)

## S4 method for signature 'fcoex'
mod_ora(fc, gmt, verbose = FALSE)

`fc`	A fcoex object.
`gmt`	A gmt file with gene sets for ora analysis
`verbose`	Controls verbosity. Defaults to FALSE.

A fcoex object containing over-representation analysis data

data("fc")
gmt_fname <- system.file("extdata", "pathways.gmt", package = "CEMiTool")
gmt_in <- read_gmt(gmt_fname)
fc <- mod_ora(fc, gmt_in)

lubianat/fcoex documentation built on Aug. 6, 2020, 3:39 a.m.

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