plot_ora: ORA visualization

In lubianat/fcoex: FCBF-based Co-Expression Networks for Single Cells

Description

Creates a bar plot with the results of module overrepresentation analysis

Usage

plot_ora(fc, ...)

## S4 method for signature 'fcoex'
plot_ora(fc, n = 10, pv_cut = 0.05, ...)

Arguments

fc	Object of class fcoex.
...	parameters to plot_ora_single
n	number of modules to show
pv_cut	p-value significance cutoff. Default is 0.05.

Value

Object of class fcoex with ORA plots

Examples

data("fc")
gmt_fname <- system.file("extdata", "pathways.gmt", package = "CEMiTool")
gmt_in <- read_gmt(gmt_fname)
fc <- mod_ora(fc, gmt_in)
fc <- plot_ora(fc)

lubianat/fcoex documentation built on Aug. 6, 2020, 3:39 a.m.