This package builds on the Epimods framework which facilitates finding weighted subnetworks ("modules") on Illumina Infinium 27k arrays using the SpinGlass algorithm, as implemented in the iGraph package. We have created a class of gene centric annotations associated with pvalues and effect sizes and scores from any researchers prior statistical results to find functional modules.
Package details 


Author  Neil Ari Wijetunga, Andrew Damon Johnston, John Murray Greally 
Bioconductor views  Coverage DifferentialExpression DifferentialMethylation GenomeAnnotation Network NetworkEnrichment RNASeq Sequencing SystemsBiology 
Maintainer  Neil Ari Wijetunga <[email protected]>, Andrew Damon Johnston <[email protected]> 
License  GPL (>=2) 
Version  1.3.0 
URL  https://github.com/GreallyLab/SMITE 
Package repository  View on GitHub 
Installation 
Install the latest version of this package by entering the following in R:

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