plotDensityPval: Plot the density of the combined scores stored in a...

In GreallyLab/SMITE: Significance-based Modules Integrating the Transcriptome and Epigenome

Description

This function in called by the normalizePval function, but can also be called by the user to visualize the relative densities of combined p-values (scores).

Usage

plotDensityPval(pvalue_annotation, ref = "expression_pvalue", ...)

Arguments

pvalue_annotation	An S4 object of class PvalueAnnotation.
ref	A character specifying the name of the reference category. DEFAULT is "expression_pvalue"
...	Additional plotting arguments

Value

Plots a multidensity plot.

Author(s)

N. Ari Wijetunga

Examples

## Load test annotation with only score data ##
data(test_annotation_score_data)

plotDensityPval(pvalue_annotation=test_annotation)

GreallyLab/SMITE documentation built on May 6, 2019, 6:30 p.m.