API for GreallyLab/SMITE
Significance-based Modules Integrating the Transcriptome and Epigenome

Global functions
REACTOME Man page
Reactome.Symbol.Igraph Man page
SMITE Man page
SMITE-package Man page
addShadowText Man page
addShadowText,ANY-method Man page
annotateExpression Man page
annotateExpression,PvalueAnnotation-method Man page
annotateModification Man page
annotateModification,PvalueAnnotation-method Man page
convertGeneIds Man page
convertGeneIds,character,character,character-method Man page
curated_expressiondata Man page
expression_curated Man page
extractExpression Man page
extractExpression,PvalueAnnotation-method Man page
extractGOseq Man page
extractGOseq,PvalueAnnotation-method Man page
extractModSummary Man page
extractModSummary,PvalueAnnotation-method Man page
extractModification Man page
extractModification,PvalueAnnotation-method Man page
extractModules Man page
extractModules,PvalueAnnotation-method Man page
extractScores Man page
extractScores,PvalueAnnotation-method Man page
genes Man page
genes_for_conversiontest Man page
h3k4me1 Man page
hg19_genes Man page
hg19_genes_bed Man page
highScores Man page
highScores,PvalueAnnotation-method Man page
histone_h3k4me1 Man page
makePvalueAnnotation Man page
makePvalueAnnotation,ANY-method Man page
makePvalueObject Man page
makePvalueObject,PvalueAnnotation-method Man page
methylation Man page
methylationdata Man page
normalizePval Man page
normalizePval,PvalueAnnotation-method Man page
plotCompareScores Man page
plotCompareScores,PvalueAnnotation-method Man page
plotDensityPval Man page
plotDensityPval,PvalueAnnotation-method Man page
plotModule Man page
plotModule,PvalueAnnotation-method Man page
removeModification Man page
removeModification,PvalueAnnotation-method Man page
runBioNet Man page
runBioNet,PvalueAnnotation-method Man page
runGOseq Man page
runGOseq,PvalueAnnotation-method Man page
runSpinglass Man page
runSpinglass,PvalueAnnotation-method Man page
scorePval Man page
scorePval,PvalueAnnotation-method Man page
searchGOseq Man page
searchGOseq,PvalueAnnotation-method Man page
stoufferTest Man page
stoufferTest,vector-method Man page
test_annotation Man page
test_annotation_score_data Man page
GreallyLab/SMITE documentation built on May 8, 2017, 12:55 p.m.