Kumquatum/GWENA: Pipeline for augmented co-expression analysis

The development of high-throughput sequencing led to increased use of co-expression analysis to go beyong single feature (i.e. gene) focus. We propose GWENA (Gene Whole co-Expression Network Analysis) , a tool designed to perform gene co-expression network analysis and explore the results in a single pipeline. It includes functional enrichment of modules of co-expressed genes, phenotypcal association, topological analysis and comparison of networks configuration between conditions.

Getting started

Package details

Bioconductor views Clustering GO GeneExpression GeneSetEnrichment GraphAndNetwork Microarray Network NetworkEnrichment Pathways RNASeq Sequencing Software Transcriptomics Visualization mRNAMicroarray
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
Kumquatum/GWENA documentation built on May 18, 2021, 10:13 p.m.