join_gost: Join gprofiler2::gost results

In Kumquatum/GWENA: Pipeline for augmented co-expression analysis

Join gprofiler2::gost results

Description

Takes list of gprofiler2::gost results and join them. Usefull to join results of gprofiler2::gost with custom gmt to other gprofiler2::gost results.

Usage

join_gost(gost_result)

Arguments

gost_result

list of gprofiler2::gost result

Details

First element of the list is taken as reference for checks on gost_result elements compatibility. If warnings returned, value from reference will be used. Also, timestamp is set to timestamp of the join

Value

A gprofiler2::gost result

Examples

query <- c("ENSG00000184349", "ENSG00000158955", "ENSG00000091140",
           "ENSG00000163114", "ENSG00000163132", "ENSG00000019186")
g1 <- gprofiler2::gost(query, sources = "GO")
g2 <- gprofiler2::gost(query, sources = "REAC")
gj <- join_gost(list(g1,g2))

Kumquatum/GWENA documentation built on July 7, 2023, 3:41 p.m.