Files in Kumquatum/GWENA
Pipeline for augmented co-expression analysis
DESCRIPTION
LICENSE.md
NAMESPACE
NEWS.md
R/biological_integration.R
R/comparison.R
R/data.R
R/data_preprocessing.R
R/net_and_modules.R
R/netrep_functions.R
R/topology.R
R/utils.R
README.md
data-raw/gtex_expr.R
data-raw/gtex_traits.R
data/gtex_expr.rda
data/gtex_traits.rda
data/kuehne_expr.rda
data/kuehne_traits.rda
inst/extdata/h.all.v6.2.entrez.gmt
inst/extdata/h.all.v6.2.symbols.gmt
man/associate_phenotype.Rd
man/bio_enrich.Rd
man/build_graph_from_sq_mat.Rd
man/build_net.Rd
man/compare_conditions.Rd
man/detect_modules.Rd
man/dot-check_data_expr.Rd
man/dot-check_gost.Rd
man/dot-check_module.Rd
man/dot-check_network.Rd
man/dot-contingencyTable.Rd
man/dot-cor_func_match.Rd
man/filter_RNA_seq.Rd
man/filter_low_var.Rd
man/get_fit.cor.Rd
man/get_fit.expr.Rd
man/get_hub_degree.Rd
man/get_hub_genes.Rd
man/get_hub_high_co.Rd
man/get_hub_kleinberg.Rd
man/get_sub_clusters.Rd
man/gg_palette.Rd
man/gtex_expr.Rd
man/gtex_traits.Rd
man/is_data_expr.Rd
man/is_gost.Rd
man/is_module.Rd
man/is_network.Rd
man/join_gost.Rd
man/kuehne_expr.Rd
man/kuehne_traits.Rd
man/matchsub.Rd
man/orderAsNumeric.Rd
man/plot_comparison_stats.Rd
man/plot_enrichment.Rd
man/plot_expression_profiles.Rd
man/plot_module.Rd
man/plot_modules_merge.Rd
man/plot_modules_phenotype.Rd
man/quiet.Rd
man/z_summary.Rd
tests/testthat.R
tests/testthat/setup-GWENA.R
tests/testthat/test-biological_integration.R
tests/testthat/test-comparison.R
tests/testthat/test-data_preprocessing.R
tests/testthat/test-net_and_modules.R
vignettes/GWENA_guide.Rmd
vignettes/figure_pipeline_schema.png
