Compute pathway enrichment scores while accounting for termterm relations. This package uses a regularized multiple linear regression to regress differential expression pvalues obtained from multicondition experiments on a pathway membership matrix. By doing so, it is able to incorporate additional biological knowledge into the enrichment analysis and to estimate pathway enrichment scores more robustly.
Package details 


Bioconductor views  DifferentialExpression GeneExpression GraphAndNetwork Network NetworkEnrichment Regression Software StatisticalMethod 
Maintainer  
License  GPL3 
Version  1.5.1 
URL  https://github.com/cbgethz/pareg 
Package repository  View on GitHub 
Installation 
Install the latest version of this package by entering the following in R:

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