fcoex: FCBF-based Co-Expression Networks for Single Cells

The fcoex package implements an easy-to use interface to co-expression analysis based on the FCBF (Fast Correlation-Based Filter) algorithm. it was implemented especifically to deal with single-cell data. The modules found can be used to redefine cell populations, unrevel novel gene associations and predict gene function by guilt-by-association. The package structure is adapted from the CEMiTool package, relying on visualizations and code designed and written by CEMiTool's authors.

Package details

AuthorTiago Lubiana [aut, cre], Helder Nakaya [aut, ths]
Bioconductor views GeneExpression GraphAndNetwork ImmunoOncology Network NetworkEnrichment Pathways RNASeq SingleCell Transcriptomics mRNAMicroarray
MaintainerTiago Lubiana <tiago.lubiana.alves@usp.br>
Package repositoryView on Bioconductor
Installation Install the latest version of this package by entering the following in R:
if (!requireNamespace("BiocManager", quietly = TRUE))


Try the fcoex package in your browser

Any scripts or data that you put into this service are public.

fcoex documentation built on Nov. 8, 2020, 6:45 p.m.