ora_data: Retrieve over representation analysis (ORA) results
In fcoex: FCBF-based Co-Expression Networks for Single Cells

Description Usage Arguments Details Value References Examples

Retrieve over representation analysis (ORA) results

ora_data(fc)

## S4 method for signature 'fcoex'
ora_data(fc)

`fc`	Object of class `fcoex`

This function returns the results of the mod_ora function on the fcoex object. The ID column corresponds to pathways in the gmt file for which genes in the modules were enriched. The Count column shows the number of genes in the module that are enriched for each pathway. The GeneRatio column shows the proportion of genes in the module enriched for a given pathway out of all the genes in the module enriched for any given pathway. The BgRatio column shows the proportion of genes in a given pathway out of all the genes in the gmt file. For more details, please refer to the clusterProfiler package documentation.

This function was ipsis litteris adapted from the CEMiTool package.

Object of class data.frame with ORA data

Guangchuang Yu, Li-Gen Wang, Yanyan Han, Qing-Yu He. clusterProfiler: an R package for comparing biological themes among gene clusters. OMICS: A Journal of Integrative Biology. 2012, 16(5):284-287.