Description Usage Arguments Value Examples
This function was modified from the CEMiTool package. Chunks of code were retained "as is"
1 2 3 4 |
fc |
A fcoex object. |
gmt |
A gmt file with gene sets for ora analysis |
verbose |
Controls verbosity. Defaults to FALSE. |
A fcoex object containing over-representation analysis data
1 2 3 4 | data("fc")
gmt_fname <- system.file("extdata", "pathways.gmt", package = "CEMiTool")
gmt_in <- pathwayPCA::read_gmt(gmt_fname)
fc <- mod_ora(fc, gmt_in)
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