arrayQualityMetrics: Quality metrics report for microarray data sets

This package generates microarray quality metrics reports for data in Bioconductor microarray data containers (ExpressionSet, NChannelSet, AffyBatch). One and two color array platforms are supported.

AuthorAudrey Kauffmann, Wolfgang Huber
Date of publicationNone
MaintainerAudrey Kauffmann <akauffmann.bioinfo@gmail.com>
LicenseLGPL (>= 2)
Version3.30.0

View on Bioconductor

Files

arrayQualityMetrics/.Rinstignore
arrayQualityMetrics/DESCRIPTION
arrayQualityMetrics/NAMESPACE
arrayQualityMetrics/R
arrayQualityMetrics/R/XYfromGAL.r
arrayQualityMetrics/R/affyspecific.r
arrayQualityMetrics/R/annotateSvg.R
arrayQualityMetrics/R/arrayQualityMetrics.r
arrayQualityMetrics/R/boxplot.r
arrayQualityMetrics/R/classes.R
arrayQualityMetrics/R/density.r
arrayQualityMetrics/R/globalParameters.R
arrayQualityMetrics/R/heatmap.r
arrayQualityMetrics/R/makeColors.R
arrayQualityMetrics/R/maplot.r
arrayQualityMetrics/R/meansd.r
arrayQualityMetrics/R/outlier.R
arrayQualityMetrics/R/pca.r
arrayQualityMetrics/R/prepdata.r
arrayQualityMetrics/R/probesmap.r
arrayQualityMetrics/R/spatial.r
arrayQualityMetrics/R/writereport.r
arrayQualityMetrics/TODO
arrayQualityMetrics/build
arrayQualityMetrics/build/vignette.rds
arrayQualityMetrics/inst
arrayQualityMetrics/inst/CITATION
arrayQualityMetrics/inst/NEWS.Rd
arrayQualityMetrics/inst/doc
arrayQualityMetrics/inst/doc/aqm.R
arrayQualityMetrics/inst/doc/aqm.Rnw
arrayQualityMetrics/inst/doc/aqm.pdf
arrayQualityMetrics/inst/doc/arrayQualityMetrics.R
arrayQualityMetrics/inst/doc/arrayQualityMetrics.Rnw
arrayQualityMetrics/inst/doc/arrayQualityMetrics.pdf
arrayQualityMetrics/inst/javascript
arrayQualityMetrics/inst/javascript/arrayQualityMetrics.css
arrayQualityMetrics/inst/javascript/arrayQualityMetrics.js
arrayQualityMetrics/inst/scripts
arrayQualityMetrics/inst/scripts/run.sh
arrayQualityMetrics/inst/scripts/testRGListAndMAList.R
arrayQualityMetrics/inst/scripts/testbeadarray.R
arrayQualityMetrics/inst/scripts/testcd8.R
arrayQualityMetrics/man
arrayQualityMetrics/man/XYfromGAL.Rd arrayQualityMetrics/man/aqm.writereport.Rd arrayQualityMetrics/man/aqmReportModule.Rd arrayQualityMetrics/man/arrayQualityMetrics.Rd arrayQualityMetrics/man/modulefunctions.Rd arrayQualityMetrics/man/outlierDetection.Rd arrayQualityMetrics/man/outliers.Rd arrayQualityMetrics/man/prepdata.Rd
arrayQualityMetrics/vignettes
arrayQualityMetrics/vignettes/aqm.Rnw
arrayQualityMetrics/vignettes/arrayQualityMetrics.Rnw
arrayQualityMetrics/vignettes/arrayQualityMetrics.bib
arrayQualityMetrics/vignettes/arraymetadatatable.png
arrayQualityMetrics/vignettes/pcaplot.png

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

Please suggest features or report bugs with the GitHub issue tracker.

All documentation is copyright its authors; we didn't write any of that.