BiocWorkflowTools: Tools to aid the development of Bioconductor Workflow packages
Version 1.2.0

Provides functions to ease the transition between Rmarkdown and LaTeX documents when authoring a Bioconductor Workflow.

Browse man pages Browse package API and functions Browse package files

AuthorMike Smith [aut, cre], Andrzej Oleś [aut]
Bioconductor views ReportWriting Software
Date of publicationNone
MaintainerMike Smith <grimbough@gmail.com>
LicenseMIT + file LICENSE
Version1.2.0
Package repositoryView on Bioconductor
InstallationInstall the latest version of this package by entering the following in R:
source("https://bioconductor.org/biocLite.R")
biocLite("BiocWorkflowTools")

Man pages

f1000_article: F1000 article format
markdownToLatex: Convert R markdown to F1000 latex
uploadToOverleaf: Upload a LaTeX project to Overleaf

Functions

checkForOverleafProject Source code
copyExternalResources Source code
f1000_article Man page Source code
markdownToLatex Man page Source code
ndividualTable Source code
processPandocTables Source code
readUTF8 Source code
uploadToOverleaf Man page Source code
writeOverleafProjectCode Source code
writeUTF8 Source code

Files

DESCRIPTION
LICENSE
NAMESPACE
NEWS
R
R/f1000_article.R
R/markdownToLatex.R
R/uploadToOverleaf.R
R/utils.R
build
build/vignette.rds
inst
inst/doc
inst/doc/Generate_F1000_Latex.R
inst/doc/Generate_F1000_Latex.Rmd
inst/doc/Generate_F1000_Latex.html
inst/examples
inst/examples/f1000_software_example.Rmd
inst/examples/frog.jpg
inst/rmarkdown
inst/rmarkdown/templates
inst/rmarkdown/templates/f1000_article
inst/rmarkdown/templates/f1000_article/resources
inst/rmarkdown/templates/f1000_article/resources/template.tex
inst/rmarkdown/templates/f1000_article/skeleton
inst/rmarkdown/templates/f1000_article/skeleton/F1000header.png
inst/rmarkdown/templates/f1000_article/skeleton/f1000_styles.sty
inst/rmarkdown/templates/f1000_article/skeleton/frog.jpg
inst/rmarkdown/templates/f1000_article/skeleton/sample.bib
inst/rmarkdown/templates/f1000_article/skeleton/skeleton.Rmd
inst/rmarkdown/templates/f1000_article/template.yaml
inst/templates
inst/templates/template_F1000SoftwareArticle.tex
man
man/f1000_article.Rd
man/markdownToLatex.Rd
man/uploadToOverleaf.Rd
vignettes
vignettes/Generate_F1000_Latex.Rmd
vignettes/Rstudio_newdoc.png
vignettes/new_files.png
BiocWorkflowTools documentation built on May 20, 2017, 9:26 p.m.