The CellScore package contains functions to evaluate the cell identity of a test sample, given a cell transition defined with a starting (donor) cell type and a desired target cell type. The evaluation is based upon a scoring system, which uses a set of standard samples of known cell types, as the reference set. The functions have been carried out on a large set of microarray data from one platform (Affymetrix Human Genome U133 Plus 2.0). In principle, the method could be applied to any expression dataset, provided that there are a sufficient number of standard samples and that the data are normalized.
|Author||Nancy Mah, Katerina Taskova|
|Bioconductor views||DataImport GeneExpression Microarray MultipleComparison ReportWriting Transcription Visualization|
|Maintainer||Nancy Mah <[email protected]>|
|Package repository||View on Bioconductor|
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