regionReport: Generate HTML or PDF reports for a set of genomic regions or DESeq2/edgeR results

Generate HTML or PDF reports to explore a set of regions such as the results from annotation-agnostic expression analysis of RNA-seq data at base-pair resolution performed by derfinder. You can also create reports for DESeq2 or edgeR results.

AuthorLeonardo Collado-Torres [aut, cre], Andrew E. Jaffe [aut], Jeffrey T. Leek [aut, ths]
Date of publicationNone
MaintainerLeonardo Collado-Torres <lcollado@jhu.edu>
LicenseArtistic-2.0
Version1.8.0
https://github.com/leekgroup/regionReport

View on Bioconductor

Files in this package

regionReport/DESCRIPTION
regionReport/NAMESPACE
regionReport/NEWS
regionReport/R
regionReport/R/DESeq2Report.R regionReport/R/derfinderReport.R regionReport/R/edgeReport.R regionReport/R/regionReport-package.R regionReport/R/renderReport.R regionReport/R/utils.R
regionReport/README.md
regionReport/build
regionReport/build/vignette.rds
regionReport/inst
regionReport/inst/CITATION
regionReport/inst/DESeq2Exploration
regionReport/inst/DESeq2Exploration/DESeq2Exploration.Rmd
regionReport/inst/basicExploration
regionReport/inst/basicExploration/basicExploration.Rmd
regionReport/inst/doc
regionReport/inst/doc/bumphunterExample.R
regionReport/inst/doc/bumphunterExample.Rmd
regionReport/inst/doc/bumphunterExample.html
regionReport/inst/doc/bumphunterExampleOutput.R
regionReport/inst/doc/bumphunterExampleOutput.Rmd
regionReport/inst/doc/bumphunterExampleOutput.html
regionReport/inst/doc/regionReport.R
regionReport/inst/doc/regionReport.Rmd
regionReport/inst/doc/regionReport.html
regionReport/inst/regionExploration
regionReport/inst/regionExploration/regionExploration.Rmd
regionReport/man
regionReport/man/DESeq2Report.Rd regionReport/man/derfinderReport.Rd regionReport/man/edgeReport.Rd regionReport/man/load_install.Rd regionReport/man/regionReport-package.Rd regionReport/man/renderReport.Rd regionReport/man/with_wd.Rd
regionReport/vignettes
regionReport/vignettes/Makefile
regionReport/vignettes/bumphunterExample.Rmd
regionReport/vignettes/bumphunterExampleOutput.Rmd
regionReport/vignettes/bumphunterExampleOutput.bib
regionReport/vignettes/fakeVignettes
regionReport/vignettes/fakeVignettes/bumphunterExampleOutput.Rmd
regionReport/vignettes/regionReport.Rmd

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