regionReport: Generate HTML or PDF reports for a set of genomic regions or DESeq2/edgeR results

Generate HTML or PDF reports to explore a set of regions such as the results from annotation-agnostic expression analysis of RNA-seq data at base-pair resolution performed by derfinder. You can also create reports for DESeq2 or edgeR results.

Package details

AuthorLeonardo Collado-Torres [aut, cre] (<https://orcid.org/0000-0003-2140-308X>), Andrew E. Jaffe [aut] (<https://orcid.org/0000-0001-6886-1454>), Jeffrey T. Leek [aut, ths] (<https://orcid.org/0000-0002-2873-2671>)
Bioconductor views Coverage DifferentialExpression DifferentialMethylation DifferentialPeakCalling ImmunoOncology QualityControl RNASeq ReportWriting Sequencing Software Transcription Visualization
MaintainerLeonardo Collado-Torres <lcolladotor@gmail.com>
LicenseArtistic-2.0
Version1.22.0
URL https://github.com/leekgroup/regionReport
Package repositoryView on Bioconductor
Installation Install the latest version of this package by entering the following in R:
source("https://bioconductor.org/biocLite.R")
biocLite("regionReport")

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regionReport documentation built on April 29, 2020, 6:38 a.m.