Glimma: Interactive HTML graphics

This package generates interactive visualisations for analysis of RNA-sequencing data using output from limma, edgeR or DESeq2 packages in an HTML page. The interactions are built on top of the popular static representations of analysis results in order to provide additional information.

AuthorShian Su, Matt Ritchie, Charity Law
Date of publicationNone
MaintainerShian Su <su.s@wehi.edu.au>
LicenseGPL-3 | file LICENSE
Version1.2.1
https://github.com/Shians/Glimma

View on Bioconductor

Functions

as.hexcol Man page
CharToHexCol Man page
glAutoinput Man page
glBar Man page
glBar.default Man page
glimma Man page
gllink Man page
glMDPlot Man page
glMDPlot.default Man page
glMDPlot.DESeqDataSet Man page
glMDPlot.DESeqResults Man page
glMDPlot.DGEExact Man page
glMDPlot.DGELRT Man page
glMDPlot.MArrayLM Man page
glMDSPlot Man page
glMDSPlot.default Man page
glMDSPlot.DGEList Man page
glScatter Man page
glScatter.default Man page
glTable Man page
gltablink Man page
glXYPlot Man page
hasColumns Man page
lymphomaRNAseq Man page
makeJson.chart Man page
makeJson.data.frame Man page
NumToHexCol Man page

Files

Glimma/DESCRIPTION
Glimma/LICENSE
Glimma/NAMESPACE
Glimma/R
Glimma/R/dataDoc.R Glimma/R/glBar.R Glimma/R/glInputs.R Glimma/R/glMDPlot.R Glimma/R/glMDSPlot.R Glimma/R/glScatter.R Glimma/R/glTable.R Glimma/R/glXYPlot.R Glimma/R/glimma.R Glimma/R/gllink.R Glimma/R/gltablink.R Glimma/R/jsHelper.R Glimma/R/jsonConvert.R Glimma/R/utilities.R
Glimma/build
Glimma/build/vignette.rds
Glimma/data
Glimma/data/lymphomaRNAseq.rda
Glimma/glimma.sublime-project
Glimma/glimma.sublime-workspace
Glimma/inst
Glimma/inst/NEWS
Glimma/inst/css
Glimma/inst/css/glimma.min.css
Glimma/inst/css/images
Glimma/inst/css/images/animated-overlay.gif
Glimma/inst/css/images/ui-bg_flat_0_aaaaaa_40x100.png
Glimma/inst/css/images/ui-bg_flat_75_ffffff_40x100.png
Glimma/inst/css/images/ui-bg_glass_55_fbf9ee_1x400.png
Glimma/inst/css/images/ui-bg_glass_65_ffffff_1x400.png
Glimma/inst/css/images/ui-bg_glass_75_dadada_1x400.png
Glimma/inst/css/images/ui-bg_glass_75_e6e6e6_1x400.png
Glimma/inst/css/images/ui-bg_glass_95_fef1ec_1x400.png
Glimma/inst/css/images/ui-bg_highlight-soft_75_cccccc_1x100.png
Glimma/inst/css/images/ui-icons_222222_256x240.png
Glimma/inst/css/images/ui-icons_2e83ff_256x240.png
Glimma/inst/css/images/ui-icons_454545_256x240.png
Glimma/inst/css/images/ui-icons_888888_256x240.png
Glimma/inst/css/images/ui-icons_cd0a0a_256x240.png
Glimma/inst/doc
Glimma/inst/doc/Glimma.R
Glimma/inst/doc/Glimma.Rnw
Glimma/inst/doc/Glimma.pdf
Glimma/inst/images
Glimma/inst/images/sort_asc.png
Glimma/inst/images/sort_asc_disabled.png
Glimma/inst/images/sort_both.png
Glimma/inst/images/sort_desc.png
Glimma/inst/images/sort_desc_disabled.png
Glimma/inst/index.html
Glimma/inst/js
Glimma/inst/js/glimma.min.js
Glimma/inst/tests
Glimma/inst/tests/test_json.r
Glimma/man
Glimma/man/CharToHexCol.Rd Glimma/man/NumToHexCol.Rd Glimma/man/as.hexcol.Rd Glimma/man/glAutoinput.Rd Glimma/man/glBar.Rd Glimma/man/glBar.default.Rd Glimma/man/glMDPlot.DESeqDataSet.Rd Glimma/man/glMDPlot.DESeqResults.Rd Glimma/man/glMDPlot.DGEExact.Rd Glimma/man/glMDPlot.DGELRT.Rd Glimma/man/glMDPlot.MArrayLM.Rd Glimma/man/glMDPlot.Rd Glimma/man/glMDPlot.default.Rd Glimma/man/glMDSPlot.DGEList.Rd Glimma/man/glMDSPlot.Rd Glimma/man/glMDSPlot.default.Rd Glimma/man/glScatter.Rd Glimma/man/glScatter.default.Rd Glimma/man/glTable.Rd Glimma/man/glXYPlot.Rd Glimma/man/glimma.Rd Glimma/man/gllink.Rd Glimma/man/gltablink.Rd Glimma/man/hasColumns.Rd Glimma/man/lymphomaRNAseq.Rd Glimma/man/makeJson.chart.Rd Glimma/man/makeJson.data.frame.Rd
Glimma/vignettes
Glimma/vignettes/Glimma.Rnw
Glimma/vignettes/GlimmaWorkFlow.pdf
Glimma/vignettes/glMDPlot.pdf
Glimma/vignettes/glMDPlotCustom.pdf
Glimma/vignettes/glMDSPlot.pdf

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

Please suggest features or report bugs with the GitHub issue tracker.

All documentation is copyright its authors; we didn't write any of that.