Glimma: Interactive HTML graphics

This package generates interactive visualisations for analysis of RNA-sequencing data using output from limma, edgeR or DESeq2 packages in an HTML page. The interactions are built on top of the popular static representations of analysis results in order to provide additional information.

Install the latest version of this package by entering the following in R:
source("https://bioconductor.org/biocLite.R")
biocLite("Glimma")
AuthorShian Su, Matt Ritchie, Charity Law
Bioconductor views DifferentialExpression RNASeq ReportWriting Visualization
Date of publicationNone
MaintainerShian Su <su.s@wehi.edu.au>
LicenseGPL-3 | file LICENSE
Version1.2.1
https://github.com/Shians/Glimma

View on Bioconductor

Functions

as.hexcol Man page
CharToHexCol Man page
glAutoinput Man page
glBar Man page
glBar.default Man page
glimma Man page
gllink Man page
glMDPlot Man page
glMDPlot.default Man page
glMDPlot.DESeqDataSet Man page
glMDPlot.DESeqResults Man page
glMDPlot.DGEExact Man page
glMDPlot.DGELRT Man page
glMDPlot.MArrayLM Man page
glMDSPlot Man page
glMDSPlot.default Man page
glMDSPlot.DGEList Man page
glScatter Man page
glScatter.default Man page
glTable Man page
gltablink Man page
glXYPlot Man page
hasColumns Man page
lymphomaRNAseq Man page
makeJson.chart Man page
makeJson.data.frame Man page
NumToHexCol Man page

Files

DESCRIPTION
LICENSE
NAMESPACE
R
R/dataDoc.R R/glBar.R R/glInputs.R R/glMDPlot.R R/glMDSPlot.R R/glScatter.R R/glTable.R R/glXYPlot.R R/glimma.R R/gllink.R R/gltablink.R R/jsHelper.R R/jsonConvert.R R/utilities.R
build
build/vignette.rds
data
data/lymphomaRNAseq.rda
glimma.sublime-project
glimma.sublime-workspace
inst
inst/NEWS
inst/css
inst/css/glimma.min.css
inst/css/images
inst/css/images/animated-overlay.gif
inst/css/images/ui-bg_flat_0_aaaaaa_40x100.png
inst/css/images/ui-bg_flat_75_ffffff_40x100.png
inst/css/images/ui-bg_glass_55_fbf9ee_1x400.png
inst/css/images/ui-bg_glass_65_ffffff_1x400.png
inst/css/images/ui-bg_glass_75_dadada_1x400.png
inst/css/images/ui-bg_glass_75_e6e6e6_1x400.png
inst/css/images/ui-bg_glass_95_fef1ec_1x400.png
inst/css/images/ui-bg_highlight-soft_75_cccccc_1x100.png
inst/css/images/ui-icons_222222_256x240.png
inst/css/images/ui-icons_2e83ff_256x240.png
inst/css/images/ui-icons_454545_256x240.png
inst/css/images/ui-icons_888888_256x240.png
inst/css/images/ui-icons_cd0a0a_256x240.png
inst/doc
inst/doc/Glimma.R
inst/doc/Glimma.Rnw
inst/doc/Glimma.pdf
inst/images
inst/images/sort_asc.png
inst/images/sort_asc_disabled.png
inst/images/sort_both.png
inst/images/sort_desc.png
inst/images/sort_desc_disabled.png
inst/index.html
inst/js
inst/js/glimma.min.js
inst/tests
inst/tests/test_json.r
man
man/CharToHexCol.Rd man/NumToHexCol.Rd man/as.hexcol.Rd man/glAutoinput.Rd man/glBar.Rd man/glBar.default.Rd man/glMDPlot.DESeqDataSet.Rd man/glMDPlot.DESeqResults.Rd man/glMDPlot.DGEExact.Rd man/glMDPlot.DGELRT.Rd man/glMDPlot.MArrayLM.Rd man/glMDPlot.Rd man/glMDPlot.default.Rd man/glMDSPlot.DGEList.Rd man/glMDSPlot.Rd man/glMDSPlot.default.Rd man/glScatter.Rd man/glScatter.default.Rd man/glTable.Rd man/glXYPlot.Rd man/glimma.Rd man/gllink.Rd man/gltablink.Rd man/hasColumns.Rd man/lymphomaRNAseq.Rd man/makeJson.chart.Rd man/makeJson.data.frame.Rd
vignettes
vignettes/Glimma.Rnw
vignettes/GlimmaWorkFlow.pdf
vignettes/glMDPlot.pdf
vignettes/glMDPlotCustom.pdf
vignettes/glMDSPlot.pdf

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

Please suggest features or report bugs with the GitHub issue tracker.

All documentation is copyright its authors; we didn't write any of that.