Glimma: Interactive HTML graphics

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This package generates interactive visualisations for analysis of RNA-sequencing data using output from limma, edgeR or DESeq2 packages in an HTML page. The interactions are built on top of the popular static representations of analysis results in order to provide additional information.

Author
Shian Su, Matt Ritchie, Charity Law
Date of publication
None
Maintainer
Shian Su <su.s@wehi.edu.au>
License
GPL-3 | file LICENSE
Version
1.2.1
URLs

View on Bioconductor

Man pages

as.hexcol
Numeric to hex colour converter
CharToHexCol
String to hex colour converter
glAutoinput
Glimma Autocomplete Input
glBar
Glimma MD Plot
glBar.default
Glimma MD Plot
glimma
Glimma plot manager
gllink
Plot linkages
glMDPlot
Glimma MD Plot
glMDPlot.default
Glimma MD Plot
glMDPlot.DESeqDataSet
Glimma MD Plot
glMDPlot.DESeqResults
Glimma MD Plot
glMDPlot.DGEExact
Glimma MD Plot
glMDPlot.DGELRT
Glimma MD Plot
glMDPlot.MArrayLM
Glimma MD Plot
glMDSPlot
Glimma MDS Plot
glMDSPlot.default
Glimma MDS Plot
glMDSPlot.DGEList
Glimma MDS Plot
glScatter
Glimma Scatter Plot
glScatter.default
Glimma Scatter Plot
glTable
Glimma Table
gltablink
Plot linkages
glXYPlot
Glimma XY Plot
hasColumns
Column checker
lymphomaRNAseq
Mouse based RNAseq data for study of smchd1 gene.
makeJson.chart
JSON converter for chart objects
makeJson.data.frame
JSON converter for data frames
NumToHexCol
Numeric to hex colour converter

Files in this package

Glimma/DESCRIPTION
Glimma/LICENSE
Glimma/NAMESPACE
Glimma/R
Glimma/R/dataDoc.R
Glimma/R/glBar.R
Glimma/R/glInputs.R
Glimma/R/glMDPlot.R
Glimma/R/glMDSPlot.R
Glimma/R/glScatter.R
Glimma/R/glTable.R
Glimma/R/glXYPlot.R
Glimma/R/glimma.R
Glimma/R/gllink.R
Glimma/R/gltablink.R
Glimma/R/jsHelper.R
Glimma/R/jsonConvert.R
Glimma/R/utilities.R
Glimma/build
Glimma/build/vignette.rds
Glimma/data
Glimma/data/lymphomaRNAseq.rda
Glimma/glimma.sublime-project
Glimma/glimma.sublime-workspace
Glimma/inst
Glimma/inst/NEWS
Glimma/inst/css
Glimma/inst/css/glimma.min.css
Glimma/inst/css/images
Glimma/inst/css/images/animated-overlay.gif
Glimma/inst/css/images/ui-bg_flat_0_aaaaaa_40x100.png
Glimma/inst/css/images/ui-bg_flat_75_ffffff_40x100.png
Glimma/inst/css/images/ui-bg_glass_55_fbf9ee_1x400.png
Glimma/inst/css/images/ui-bg_glass_65_ffffff_1x400.png
Glimma/inst/css/images/ui-bg_glass_75_dadada_1x400.png
Glimma/inst/css/images/ui-bg_glass_75_e6e6e6_1x400.png
Glimma/inst/css/images/ui-bg_glass_95_fef1ec_1x400.png
Glimma/inst/css/images/ui-bg_highlight-soft_75_cccccc_1x100.png
Glimma/inst/css/images/ui-icons_222222_256x240.png
Glimma/inst/css/images/ui-icons_2e83ff_256x240.png
Glimma/inst/css/images/ui-icons_454545_256x240.png
Glimma/inst/css/images/ui-icons_888888_256x240.png
Glimma/inst/css/images/ui-icons_cd0a0a_256x240.png
Glimma/inst/doc
Glimma/inst/doc/Glimma.R
Glimma/inst/doc/Glimma.Rnw
Glimma/inst/doc/Glimma.pdf
Glimma/inst/images
Glimma/inst/images/sort_asc.png
Glimma/inst/images/sort_asc_disabled.png
Glimma/inst/images/sort_both.png
Glimma/inst/images/sort_desc.png
Glimma/inst/images/sort_desc_disabled.png
Glimma/inst/index.html
Glimma/inst/js
Glimma/inst/js/glimma.min.js
Glimma/inst/tests
Glimma/inst/tests/test_json.r
Glimma/man
Glimma/man/CharToHexCol.Rd
Glimma/man/NumToHexCol.Rd
Glimma/man/as.hexcol.Rd
Glimma/man/glAutoinput.Rd
Glimma/man/glBar.Rd
Glimma/man/glBar.default.Rd
Glimma/man/glMDPlot.DESeqDataSet.Rd
Glimma/man/glMDPlot.DESeqResults.Rd
Glimma/man/glMDPlot.DGEExact.Rd
Glimma/man/glMDPlot.DGELRT.Rd
Glimma/man/glMDPlot.MArrayLM.Rd
Glimma/man/glMDPlot.Rd
Glimma/man/glMDPlot.default.Rd
Glimma/man/glMDSPlot.DGEList.Rd
Glimma/man/glMDSPlot.Rd
Glimma/man/glMDSPlot.default.Rd
Glimma/man/glScatter.Rd
Glimma/man/glScatter.default.Rd
Glimma/man/glTable.Rd
Glimma/man/glXYPlot.Rd
Glimma/man/glimma.Rd
Glimma/man/gllink.Rd
Glimma/man/gltablink.Rd
Glimma/man/hasColumns.Rd
Glimma/man/lymphomaRNAseq.Rd
Glimma/man/makeJson.chart.Rd
Glimma/man/makeJson.data.frame.Rd
Glimma/vignettes
Glimma/vignettes/Glimma.Rnw
Glimma/vignettes/GlimmaWorkFlow.pdf
Glimma/vignettes/glMDPlot.pdf
Glimma/vignettes/glMDPlotCustom.pdf
Glimma/vignettes/glMDSPlot.pdf