yaqcaffy: Affymetrix expression data quality control and reproducibility analysis

Quality control of Affymetrix GeneChip expression data and reproducibility analysis of human whole genome chips with the MAQC reference datasets.

AuthorLaurent Gatto
Date of publicationNone
MaintainerLaurent Gatto <lg390@cam.ac.uk>
LicenseArtistic-2.0
Version1.34.0

View on Bioconductor

Functions

arrays Man page
arrays,YAQCStats-method Man page
avbg,YAQCStats-method Man page
avns Man page
avns,YAQCStats-method Man page
bio Man page
bioCalls Man page
bioCalls,YAQCStats-method Man page
bio-methods Man page
bio,YaqcBioProbes-method Man page
bio,YaqcControlProbes-method Man page
class:YaqcBioProbes Man page
class:YaqcControlProbes Man page
class:YaqcDegProbes Man page
class:YaqcSpkProbes Man page
class:YAQCStats Man page
deg Man page
deg-methods Man page
deg,YaqcControlProbes-method Man page
deg,YaqcDegProbes-method Man page
gcosProbes Man page
gcosProbes,YAQCStats-method Man page
getAllInt Man page
getBioProbes Man page
getOutliers Man page
getQCRatios Man page
getRatioProbes Man page
getSpikeProbes Man page
getYaqcControlProbes Man page
getYaqcControlProbes Man page
getYaqcControlProbes,YAQCStats-method Man page
getYaqcControlProbes,YAQCStats-method Man page
info Man page
info<- Man page
info<-,YaqcControlProbes-method Man page
info,YaqcControlProbes-method Man page
isLog Man page
isLog,YAQCStats-method Man page
merge,YAQCStats-method Man page
merge,YAQCStats,YAQCStats-method Man page
method:yaqc Man page
minbg,YAQCStats-method Man page
moreSpikeInProbes Man page
moreSpikeInProbes,YAQCStats-method Man page
objectVersion Man page
objectVersion,YAQCStats-method Man page
objectVersion,YAQCStats-method Man page
percent.present,YAQCStats-method Man page
plot,YAQCStats Man page
plot,YAQCStats,missing-method Man page
probeSelectionInterface Man page
reprodPlot Man page
sfs,YAQCStats-method Man page
show,YaqcBioProbes-method Man page
show,YaqcControlProbes-method Man page
show,YaqcDegProbes-method Man page
show,YaqcSpkProbes-method Man page
show,YAQCStats-method Man page
spk Man page
spk-methods Man page
spk,YaqcControlProbes-method Man page
spk,YaqcSpkProbes-method Man page
summary,YAQCStats-method Man page
target,YAQCStats-method Man page
yaqc Man page
yaqc.affy Man page
yaqc,AffyBatch-method Man page
YaqcBioProbes-class Man page
YaqcControlProbes-class Man page
YaqcDegProbes-class Man page
yaqc,eSet-method Man page
yaqc,ExpressionSet-method Man page
yaqc-method Man page
yaqc-methods Man page
yaqc.plot Man page
YaqcSpkProbes-class Man page
YAQCStats-class Man page
yaqc.summary Man page

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