getAllInt: Get the summerized MAS5 values for a given spike probe

In yaqcaffy: Affymetrix expression data quality control and reproducibility analysis

Description

This function retrieves the expression intensities prvided by the object of class "YAQCStats" for the probe which names are compatible with the given pattern and return their mean value.

Usage

  getAllInt(YAQCStatsObject,pattern)

Arguments

YAQCStatsObject	an object of type "YAQCStats"
pattern	a pattern used to select the probe names to be used

Value

An object of type "numeric" in which the mean expression intensities of each array are given.

Author(s)

Laurent Gatto

Examples

    ## load a dataset
    library(affydata)
    data(Dilution)
    ## perform quality control
    qc <- yaqc(Dilution)
    ## get intensities for the biob
    ## spikes probe sets
    getAllInt(qc,"biob")
    ## or
    getAllInt(qc,"b[3|5|m]")

yaqcaffy documentation built on Nov. 8, 2020, 8:31 p.m.