DEGreport: Report of DEG analysis

Creation of a HTML report of differential expression analyses of count data. It integrates some of the code mentioned in DESeq2 and edgeR vignettes, and report a ranked list of genes according to the fold changes mean and variability for each selected gene.

Install the latest version of this package by entering the following in R:
source("https://bioconductor.org/biocLite.R")
biocLite("DEGreport")
AuthorLorena Pantano
Bioconductor views DifferentialExpression GeneExpression RNASeq ReportWriting Visualization
Date of publicationNone
MaintainerLorena Pantano <lorena.pantano@gmail.com>
LicenseMIT + file LICENSE
Version1.10.1

View on Bioconductor

Functions

createReport Man page
degBI Man page
degBIcmd Man page
degComb Man page
degFC Man page
degMB Man page
degMean Man page
degMerge Man page
degMV Man page
degNcomb Man page
degObj Man page
degPatterns Man page
degPlot Man page
degPR Man page
degRank Man page
DEGreportSet Man page
degResults Man page
degVar Man page
degVB Man page
degVolcano Man page
geneInfo Man page
humanSexDEedgeR Man page
show_deseq2_results Man page

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

Please suggest features or report bugs with the GitHub issue tracker.

All documentation is copyright its authors; we didn't write any of that.