DEGreport: Report of DEG analysis

Creation of a HTML report of differential expression analyses of count data. It integrates some of the code mentioned in DESeq2 and edgeR vignettes, and report a ranked list of genes according to the fold changes mean and variability for each selected gene.

AuthorLorena Pantano
Date of publicationNone
MaintainerLorena Pantano <lorena.pantano@gmail.com>
LicenseMIT + file LICENSE
Version1.10.0

View on Bioconductor

Files in this package

DEGreport/.travis.yml
DEGreport/DESCRIPTION
DEGreport/LICENSE
DEGreport/NAMESPACE
DEGreport/R
DEGreport/R/DEGreportSet.R DEGreport/R/clustering.R DEGreport/R/geneInfo.R DEGreport/R/humanSexDEedgeR-data.R DEGreport/R/methods.R DEGreport/R/report.R DEGreport/R/volcanoPlot.R
DEGreport/README.md
DEGreport/build
DEGreport/build/vignette.rds
DEGreport/data
DEGreport/data/DEGreportSet.rda
DEGreport/data/datalist
DEGreport/data/geneInfo.rda
DEGreport/data/humanSexDEedgeR.rda
DEGreport/inst
DEGreport/inst/NEWS
DEGreport/inst/doc
DEGreport/inst/doc/DEGreport.R
DEGreport/inst/doc/DEGreport.Rnw
DEGreport/inst/doc/DEGreport.pdf
DEGreport/inst/unitTests
DEGreport/inst/unitTests/test_singleFunctions.R
DEGreport/man
DEGreport/man/DEGreportSet.Rd DEGreport/man/createReport.Rd DEGreport/man/degBI.Rd DEGreport/man/degBIcmd.Rd DEGreport/man/degComb.Rd DEGreport/man/degFC.Rd DEGreport/man/degMB.Rd DEGreport/man/degMV.Rd DEGreport/man/degMean.Rd DEGreport/man/degMerge.Rd DEGreport/man/degNcomb.Rd DEGreport/man/degObj.Rd DEGreport/man/degPR.Rd DEGreport/man/degPatterns.Rd DEGreport/man/degPlot.Rd DEGreport/man/degRank.Rd DEGreport/man/degResults.Rd DEGreport/man/degVB.Rd DEGreport/man/degVar.Rd DEGreport/man/degVolcano.Rd DEGreport/man/geneInfo.Rd DEGreport/man/humanSexDEedgeR.Rd
DEGreport/tests
DEGreport/tests/runTests.R
DEGreport/vignettes
DEGreport/vignettes/DEGreport.Rnw

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