DEGreport: Report of DEG analysis

Creation of a HTML report of differential expression analyses of count data. It integrates some of the code mentioned in DESeq2 and edgeR vignettes, and report a ranked list of genes according to the fold changes mean and variability for each selected gene.

AuthorLorena Pantano
Date of publicationNone
MaintainerLorena Pantano <lorena.pantano@gmail.com>
LicenseMIT + file LICENSE
Version1.10.1

View on Bioconductor

Functions

createReport Man page
degBI Man page
degBIcmd Man page
degComb Man page
degFC Man page
degMB Man page
degMean Man page
degMerge Man page
degMV Man page
degNcomb Man page
degObj Man page
degPatterns Man page
degPlot Man page
degPR Man page
degRank Man page
DEGreportSet Man page
degResults Man page
degVar Man page
degVB Man page
degVolcano Man page
geneInfo Man page
humanSexDEedgeR Man page
show_deseq2_results Man page

Files

DEGreport/.travis.yml
DEGreport/DESCRIPTION
DEGreport/LICENSE
DEGreport/NAMESPACE
DEGreport/R
DEGreport/R/DEGreportSet.R DEGreport/R/clustering.R DEGreport/R/geneInfo.R DEGreport/R/humanSexDEedgeR-data.R DEGreport/R/methods.R DEGreport/R/report.R DEGreport/R/volcanoPlot.R
DEGreport/README.md
DEGreport/build
DEGreport/build/vignette.rds
DEGreport/data
DEGreport/data/DEGreportSet.rda
DEGreport/data/datalist
DEGreport/data/geneInfo.rda
DEGreport/data/humanSexDEedgeR.rda
DEGreport/inst
DEGreport/inst/NEWS
DEGreport/inst/doc
DEGreport/inst/doc/DEGreport.R
DEGreport/inst/doc/DEGreport.Rnw
DEGreport/inst/doc/DEGreport.pdf
DEGreport/inst/unitTests
DEGreport/inst/unitTests/test_singleFunctions.R
DEGreport/man
DEGreport/man/DEGreportSet.Rd DEGreport/man/createReport.Rd DEGreport/man/degBI.Rd DEGreport/man/degBIcmd.Rd DEGreport/man/degComb.Rd DEGreport/man/degFC.Rd DEGreport/man/degMB.Rd DEGreport/man/degMV.Rd DEGreport/man/degMean.Rd DEGreport/man/degMerge.Rd DEGreport/man/degNcomb.Rd DEGreport/man/degObj.Rd DEGreport/man/degPR.Rd DEGreport/man/degPatterns.Rd DEGreport/man/degPlot.Rd DEGreport/man/degRank.Rd DEGreport/man/degResults.Rd DEGreport/man/degVB.Rd DEGreport/man/degVar.Rd DEGreport/man/degVolcano.Rd DEGreport/man/geneInfo.Rd DEGreport/man/humanSexDEedgeR.Rd
DEGreport/tests
DEGreport/tests/runTests.R
DEGreport/vignettes
DEGreport/vignettes/DEGreport.Rnw

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

Please suggest features or report bugs with the GitHub issue tracker.

All documentation is copyright its authors; we didn't write any of that.