Description Usage Arguments Value Examples
Plot selected genes on a wide format
1 | degPlotWide(counts, genes, group, metadata = NULL, batch = NULL)
|
counts |
DESeq2::DESeqDataSet object or expression matrix |
genes |
character genes to plot. |
group |
character, colname in colData to color points and add different lines for each level |
metadata |
data.frame, information for each sample. Not needed if DESeq2::DESeqDataSet given as counts. |
batch |
character, colname in colData to shape points, normally used by batch effect visualization |
ggplot showing the expresison of the genes on the x axis
1 2 3 4 5 6 7 | data(humanGender)
library(DESeq2)
idx <- c(1:10, 75:85)
dse <- DESeqDataSetFromMatrix(assays(humanGender)[[1]][1:1000, idx],
colData(humanGender)[idx,], design=~group)
dse <- DESeq(dse)
degPlotWide(dse, rownames(dse)[1:10], group = "group")
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