degMean: Distribution of pvalues by expression range

Description Usage Arguments Value Examples

View source: R/methods.R

Description

This function plot the p-values distribution colored by the quantiles of the average count data.

Usage

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degMean(pvalues, counts)

Arguments

pvalues

pvalues of DEG analysis.

counts

Matrix with counts for each samples and each gene. row number should be the same length than pvalues vector.

Value

ggplot2 object

Examples

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data(humanGender)
library(DESeq2)
idx <- c(1:10, 75:85)
dds <- DESeqDataSetFromMatrix(assays(humanGender)[[1]][1:1000, idx],
  colData(humanGender)[idx,], design=~group)
dds <- DESeq(dds)
res <- results(dds)
degMean(res[, 4], counts(dds))

DEGreport documentation built on Nov. 17, 2017, 1:23 p.m.