abseqR: Reporting and data analysis functionalities for Rep-Seq datasets of antibody libraries

AbSeq is a comprehensive bioinformatic pipeline for the analysis of sequencing datasets generated from antibody libraries and abseqR is one of its packages. abseqR empowers the users of abseqPy (https://github.com/malhamdoosh/abseqPy) with plotting and reporting capabilities and allows them to generate interactive HTML reports for the convenience of viewing and sharing with other researchers. Additionally, abseqR extends abseqPy to compare multiple repertoire analyses and perform further downstream analysis on its output.

Package details

AuthorJiaHong Fong [cre, aut], Monther Alhamdoosh [aut]
Bioconductor views MultipleComparison QualityControl ReportWriting Sequencing Visualization
MaintainerJiaHong Fong <jiahfong@gmail.com>
LicenseGPL-3 | file LICENSE
URL https://github.com/malhamdoosh/abseqR
Package repositoryView on Bioconductor
Installation Install the latest version of this package by entering the following in R:
if (!requireNamespace("BiocManager", quietly = TRUE))


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abseqR documentation built on Nov. 8, 2020, 8:28 p.m.