dot-analyzeUpstreamValidity: Plots the validity of upstream sequences

In abseqR: Reporting and data analysis functionalities for Rep-Seq datasets of antibody libraries

Description

Plots the distribution of valid, faulty, and missing start codon in IGV germlines (repeated for gene and family levels).

Usage

.analyzeUpstreamValidity(upstreamDirectories, upstreamOut, expectedLength,
  upstreamLengthRange, sampleNames, combinedNames, mashedNames,
  .save = TRUE)

Arguments

upstreamDirectories	list type. List of sample directories
upstreamOut	string type. Output directory
expectedLength	int type. Expected length of upstream sequences. (i.e. upstream_end - upstream_start + 1). If this is infinite, no plots will be generated.
upstreamLengthRange	string type. start_end format
sampleNames	vector type. 1-1 with upstream directories
combinedNames	string type. Title friendly "combined" sample names
mashedNames	string type. File friendly "mashed-up" sample names
.save	logical type. Save Rdata?

Value

None

abseqR documentation built on Nov. 8, 2020, 8:28 p.m.