API for abseqR
Reporting and data analysis functionalities for Rep-Seq datasets of antibody libraries

Global functions
+,AbSeqCRep,AbSeqCRep-method Man page
+,AbSeqCRep,AbSeqRep-method Man page
+,AbSeqRep,AbSeqCRep-method Man page
+,AbSeqRep,AbSeqRep-method Man page
.UTR5Analysis Man page
.abundanceAnalysis Man page
.abundancePlot Man page
.alignQualityHeatMaps Man page
.allPrimerNames Man page
.aminoAcidBar Man page
.aminoAcidPlot Man page
.analyzeUpstreamValidity Man page
.annotAnalysis Man page
.asRepertoireAlignLen Man page
.asRepertoireBitscore Man page
.asRepertoireChain Man page
.asRepertoireDir Man page
.asRepertoireList Man page
.asRepertoireName Man page
.asRepertoirePrimer3 Man page
.asRepertoirePrimer5 Man page
.asRepertoireQueryStart Man page
.asRepertoireSubjectStart Man page
.asRepertoireUpstream Man page
.boxPlot Man page
.calculateDInd Man page
.calculateDiversityEstimates Man page
.canonicalizeTitle Man page
.capitalize Man page
.checkVert Man page
.cloneDistHist Man page
.cloneDistMarginal Man page
.clonotypeAnalysis Man page
.collateReports Man page
.commonPrimerNames Man page
.correlationTest Man page
.distanceMeasure Man page
.diversityAnalysis Man page
.emptyPlot Man page
.findRepertoires Man page
.generateAllSpectratypes Man page
.generateDelayedReport Man page
.generateReport Man page
.getLineTypes Man page
.getTotal Man page
.hmFromMatrix Man page
.inferAnalyzed Man page
.loadMatrixFromDF Man page
.loadSamplesFromString Man page
.pairwiseComparison Man page
.plotCirclize Man page
.plotDist Man page
.plotDiversityCurves Man page
.plotDuplication Man page
.plotErrorDist Man page
.plotIGVErrors Man page
.plotIGVUpstreamLenDist Man page
.plotIGVUpstreamLenDistDetailed Man page
.plotPrimerIGVStatus Man page
.plotPrimerIntegrity Man page
.plotRarefaction Man page
.plotRecapture Man page
.plotSamples Man page
.plotSpectratype Man page
.plotUpstreamLength Man page
.plotUpstreamLengthDist Man page
.primerAnalysis Man page
.prodDistPlot Man page
.productivityAnalysis Man page
.productivityPlot Man page
.readSummary Man page
.regionAnalysis Man page
.reportLBE Man page
.saveAs Man page
.scatterPlot Man page
.scatterPlotComplex Man page
.secretionSignalAnalysis Man page
.substituteStringInFile Man page
.summarySE Man page
.topNDist Man page
.vennIntersection Man page
AbSeqCRep Man page
AbSeqCRep-class Man page
AbSeqRep Man page
AbSeqRep-class Man page
UTR5Analysis Source code
abseqReport Man page Source code
abundanceAnalysis Source code
abundancePlot Source code
alignQualityHeatMaps Source code
allPrimerNames Source code
aminoAcidBar Source code
aminoAcidPlot Source code
analyzeUpstreamValidity Source code
annotAnalysis Source code
asRepertoireAlignLen Source code
asRepertoireBitscore Source code
asRepertoireChain Source code
asRepertoireDir Source code
asRepertoireList Source code
asRepertoireName Source code
asRepertoirePrimer3 Source code
asRepertoirePrimer5 Source code
asRepertoireQueryStart Source code
asRepertoireSubjectStart Source code
asRepertoireUpstream Source code
boxPlot Source code
calculateDInd Source code
calculateDiversityEstimates Source code
canonicalizeTitle Source code
capitalize Source code
checkVert Source code
cloneDistHist Source code
cloneDistMarginal Source code
clonotypeAnalysis Source code
collateReports Source code
commonPrimerNames Source code
correlationTest Source code
distanceMeasure Source code
diversityAnalysis Source code
emptyPlot Source code
findRepertoires Source code
generateAllSpectratypes Source code
generateDelayedReport Source code
getLineTypes Source code
getTotal Source code
hmFromMatrix Source code
listFilesInOrder Source code
loadAbSeqRepFromParams Source code
loadMatrixFromDF Source code
loadSamplesFromString Source code
nferAnalyzed Source code
pairwiseComparison Source code
plotCirclize Source code
plotDist Source code
plotDiversityCurves Source code
plotDuplication Source code
plotErrorDist Source code
plotIGVErrors Source code
plotIGVUpstreamLenDist Source code
plotIGVUpstreamLenDistDetailed Source code
plotPrimerIGVStatus Source code
plotPrimerIntegrity Source code
plotRarefaction Source code
plotRecapture Source code
plotSamples Source code
plotSpectratype Source code
plotUpstreamLength Source code
plotUpstreamLengthDist Source code
primerAnalysis Source code
prodDistPlot Source code
productivityAnalysis Source code
productivityPlot Source code
readSummary Source code
regionAnalysis Source code
report Man page
report,AbSeqCRep-method Man page
report,AbSeqRep-method Man page
reportLBE Source code
saveAs Source code
scatterPlot Source code
scatterPlotComplex Source code
secretionSignalAnalysis Source code
substituteStringInFile Source code
summarySE Source code
topNDist Source code
vennIntersection Source code
abseqR documentation built on Nov. 1, 2018, 4:34 a.m.