API for abseqR
Reporting and data analysis functionalities for Rep-Seq datasets of antibody libraries
| Global functions | |
|---|---|
| +,AbSeqCRep,AbSeqCRep-method | Man page |
| +,AbSeqCRep,AbSeqRep-method | Man page |
| +,AbSeqRep,AbSeqCRep-method | Man page |
| +,AbSeqRep,AbSeqRep-method | Man page |
| .UTR5Analysis | Man page Source code |
| .abundanceAnalysis | Man page Source code |
| .abundancePlot | Man page Source code |
| .alignQualityHeatMaps | Man page Source code |
| .allPrimerNames | Man page Source code |
| .aminoAcidBar | Man page Source code |
| .aminoAcidPlot | Man page Source code |
| .analyzeUpstreamValidity | Man page Source code |
| .annotAnalysis | Man page Source code |
| .asRepertoireAlignLen | Man page Source code |
| .asRepertoireBitscore | Man page Source code |
| .asRepertoireChain | Man page Source code |
| .asRepertoireDir | Man page Source code |
| .asRepertoireList | Man page Source code |
| .asRepertoireName | Man page Source code |
| .asRepertoirePrimer3 | Man page Source code |
| .asRepertoirePrimer5 | Man page Source code |
| .asRepertoireQueryStart | Man page Source code |
| .asRepertoireSubjectStart | Man page Source code |
| .asRepertoireUpstream | Man page Source code |
| .boxPlot | Man page Source code |
| .calculateDInd | Man page Source code |
| .calculateDiversityEstimates | Man page Source code |
| .canonicalizeTitle | Man page Source code |
| .capitalize | Man page Source code |
| .checkVert | Man page Source code |
| .cloneDistHist | Man page Source code |
| .cloneDistMarginal | Man page Source code |
| .clonotypeAnalysis | Man page Source code |
| .collateReports | Man page Source code |
| .commonPrimerNames | Man page Source code |
| .correlationTest | Man page Source code |
| .distanceMeasure | Man page Source code |
| .diversityAnalysis | Man page Source code |
| .emptyPlot | Man page Source code |
| .findRepertoires | Man page Source code |
| .generateAllSpectratypes | Man page Source code |
| .generateDelayedReport | Man page Source code |
| .generateReport | Man page |
| .getLineTypes | Man page Source code |
| .getTotal | Man page Source code |
| .hmFromMatrix | Man page Source code |
| .inferAnalyzed | Man page Source code |
| .listFilesInOrder | Source code |
| .loadAbSeqRepFromParams | Source code |
| .loadMatrixFromDF | Man page Source code |
| .loadSamplesFromString | Man page Source code |
| .pairwiseComparison | Man page Source code |
| .plotCirclize | Man page Source code |
| .plotDist | Man page Source code |
| .plotDiversityCurves | Man page Source code |
| .plotDuplication | Man page Source code |
| .plotErrorDist | Man page Source code |
| .plotIGVErrors | Man page Source code |
| .plotIGVUpstreamLenDist | Man page Source code |
| .plotIGVUpstreamLenDistDetailed | Man page Source code |
| .plotPrimerIGVStatus | Man page Source code |
| .plotPrimerIntegrity | Man page Source code |
| .plotRarefaction | Man page Source code |
| .plotRecapture | Man page Source code |
| .plotSamples | Man page Source code |
| .plotSpectratype | Man page Source code |
| .plotUpstreamLength | Man page Source code |
| .plotUpstreamLengthDist | Man page Source code |
| .primerAnalysis | Man page Source code |
| .prodDistPlot | Man page Source code |
| .productivityAnalysis | Man page Source code |
| .productivityPlot | Man page Source code |
| .readSummary | Man page Source code |
| .regionAnalysis | Man page Source code |
| .reportLBE | Man page Source code |
| .saveAs | Man page Source code |
| .scatterPlot | Man page Source code |
| .scatterPlotComplex | Man page Source code |
| .secretionSignalAnalysis | Man page Source code |
| .substituteStringInFile | Man page Source code |
| .summarySE | Man page Source code |
| .topNDist | Man page Source code |
| .vennIntersection | Man page Source code |
| AbSeqCRep | Man page |
| AbSeqCRep-class | Man page |
| AbSeqRep | Man page |
| AbSeqRep-class | Man page |
| abseqReport | Man page Source code |
| report | Man page |
| report,AbSeqCRep-method | Man page |
| report,AbSeqRep-method | Man page |
