dot-UTR5Analysis: 5' UTR analysis

In abseqR: Reporting and data analysis functionalities for Rep-Seq datasets of antibody libraries

Description

Generates all the required plots for 5' UTR analysis. This includes upstream length distributions and upstream sequence validity.

Usage

.UTR5Analysis(utr5Directories, utr5Out, sampleNames, combinedNames,
  mashedNames, upstreamRanges, .save = TRUE)

Arguments

utr5Directories	list type. 5UTR directories where files are located
utr5Out	string type. Where to dump output
sampleNames	vector type. 1-1 with utr5Directories
combinedNames	string type. Title friendly string
mashedNames	string type. File name friendly string
upstreamRanges	list type. Upstream ranges for each sample. If length(utr5Directories) > 1, the plots will only be generated for upstream ranges that are present in ALL samples. (i.e the intersection)
.save	logical type, save Rdata?

Value

none

abseqR documentation built on Nov. 8, 2020, 8:28 p.m.